PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03307g05001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 425aa    MW: 47824.1 Da    PI: 7.2845
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03307g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.37.9e-29491781128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                               lp+G++F+Ptd+el+ e+L++kv +kk + ++  i+e     + P  ++  v+ +  + +fF++ +k+y+tg+rk+r+++     
  Niben101Scf03307g05001.1  49 LPAGVKFDPTDQELI-EHLEAKVVSKKESKSHPlIDE-----FIPT-IE-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdl 125
                               799************.99*999998886554442444.....3443.32.333455678******************73334555 PP

                       NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                  + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Niben101Scf03307g05001.1 126 qggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 178
                               544778************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575115No hitNo description
SuperFamilySSF1019417.45E-3445197IPR003441NAC domain
PROSITE profilePS5100528.04149197IPR003441NAC domain
PfamPF023653.6E-1650178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNKSSSHQLG SISSCDLIDA KLEEHQLCGS KQCPGCGQKL EGKPDWVGLP AGVKFDPTDQ  60
ELIEHLEAKV VSKKESKSHP LIDEFIPTIE GVTRDGLSRH FFHRPSKAYT TGTRKRRKIQ  120
TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN WVMHQYHLGQ  180
NEEEREGELV VSKIFYQTQP RQCNTSTTWS NNERSINNTG DHSGSGSCSS KEMNNINPNS  240
HSHRDEFSVS VGAAMSSNYN TVNVRQLKAD HFSCLPFRSN FDEAGITDQA AGTCEEPESQ  300
RQHPPHHVTH ESSHNHQNQI ATSAAFSISR PSPPISAIIA PPPPLHHTSV ILDQDSFHVP  360
RNYNLQQQQH HKVLVRRSVS GLEELIMGCT STDIKEESSL TNPQEADWLK YSSFWTDPEN  420
TDHHE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252561.10.0PREDICTED: NAC domain-containing protein 73-like
RefseqXP_019252562.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotQ9M0F81e-152NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1J6I5N10.0A0A1J6I5N1_NICAT; Nac domain-containing protein 73
STRINGXP_009595150.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-138NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]