PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03236g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 325aa    MW: 36299.9 Da    PI: 9.9337
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03236g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.93.2e-3567124359
               ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                                v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee
  Niben101Scf03236g00004.1  67 VVIYKECLKNHAASLGGHAVDGCGEFMPSPTANpADPTSLKCAACGCHRNFHRREPEE 124
                               589******************************9*********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.1E-2968122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-3170121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2370120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.24370121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.99E-18206274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28208274IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-26213269IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDLTNNTSTT TIPTLPNTTT ITTTSAHIKN PEAEIETPTQ IQKPKPFSFS NGVLKRKNLF  60
QHHHPVVVIY KECLKNHAAS LGGHAVDGCG EFMPSPTANP ADPTSLKCAA CGCHRNFHRR  120
EPEEPVVIPP PPIATAALEY QPHHRHHPPP PPPPLPRGDH SSPNSPSPPP ISSAYYPASA  180
PHKLLALSAG FSGEKNHNPI SSPVANTFNS NGRKRFRTKF TPDQKVKMLE FAERVGWKMQ  240
KRDEDLVRSF CNEIGVEKGV LKVWMHNNKI TFGKKLDQHQ LADININNNG NSTNVVNGFC  300
IVSRXHFWEE IRSTPPRRHQ HQQKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-202142691873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787877.11e-152PREDICTED: zinc-finger homeodomain protein 9-like
RefseqXP_016507066.11e-152PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF05e-70ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A1S4D0Z91e-151A0A1S4D0Z9_TOBAC; zinc-finger homeodomain protein 9-like
TrEMBLA0A1U7X6Z91e-151A0A1U7X6Z9_NICSY; zinc-finger homeodomain protein 9-like
STRINGXP_009787877.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-63homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]