PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03156g01010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 152aa    MW: 16854.3 Da    PI: 6.4851
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03156g01010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.21.4e-4371061100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasn++k++++lp ++r da++s vyeA+ar+rdPvyG+vg i+ lq+
  Niben101Scf03156g01010.1   7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMIQELPIQQRADAVNSFVYEANARMRDPVYGCVGAISYLQN 91 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ql+ +la++++e
  Niben101Scf03156g01010.1  92 QVSQLEMQLAMAQTE 106
                               **********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7296107IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-437104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGGGTSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNISK MIQELPIQQR  60
ADAVNSFVYE ANARMRDPVY GCVGAISYLQ NQVSQLEMQL AMAQTEILCI QMQQESAPNL  120
PAIQMEQYDG STPQALSFGS PNYLVAGEEF RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4731087112LOB family transfactor Ramosa2.1
5ly0_B3e-4731087112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240841.11e-109PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-73LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1J6JRW51e-108A0A1J6JRW5_NICAT; Lob domain-containing protein 12
STRINGXP_009784491.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-76LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]