PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03085g03004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 272aa    MW: 30631.4 Da    PI: 6.03
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03085g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.92.3e-311699666
                       TCP  6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................s 66
                              drhsk++T +g+RdRRvRlsa++a++f+d+qd+LG+dk+sk+++WL+++ak  i++l+++                       +
  Niben101Scf03085g03004.1 16 DRHSKVYTTKGPRDRRVRLSALTAIQFYDVQDRLGYDKPSKAVDWLINKAKNVIDKLVELppwnpnddiilknnmptsierevG 99
                              8***********************************************************877666666655444333333220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.9061472IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-291693IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSLFCLTPFG LMTFGDRHSK VYTTKGPRDR RVRLSALTAI QFYDVQDRLG YDKPSKAVDW  60
LINKAKNVID KLVELPPWNP NDDIILKNNM PTSIEREVGS SGNISLEPHP LSNFSSRFLA  120
ENSSSDTSYV MPAPEPETSS IIDTSKSFFQ MNSGTILMNF LSFPHETMSR DSIQNEDLGL  180
SLHFGANYNP RMANWILPHQ QFLSQREPLQ PNISQLTSHA WELEQPMASA EHKSSISNSH  240
FNGDFQFPAR LIQGEEDING VICIKPSSGS QH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624544.11e-149PREDICTED: transcription factor TCP4-like isoform X1
RefseqXP_009624545.11e-149PREDICTED: transcription factor TCP4-like isoform X1
SwissprotQ8LPR51e-37TCP4_ARATH; Transcription factor TCP4
TrEMBLG3BGV01e-68G3BGV0_SOLLC; TCP transcription factor 10
STRINGPGSC0003DMT4000243282e-67(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.38e-39TCP family protein