PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03085g03003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 281aa    MW: 31668.6 Da    PI: 6.6087
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03085g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.81.7e-3321108266
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................... 65 
                               +g+kdrhsk++T +g+RdRRvRlsa++a++f+d+qd+LG+dk+sk+++WL+++ak  i++l+++                     
  Niben101Scf03085g03003.1  21 TGRKDRHSKVYTTKGPRDRRVRLSALTAIQFYDVQDRLGYDKPSKAVDWLINKAKNVIDKLVELppwnpnddiilknnmptsier 105
                               79**************************************************************877666666655444333333 PP

                       TCP  66 ..s 66 
                                 +
  Niben101Scf03085g03003.1 106 evG 108
                               220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3121102IPR005333Transcription factor, TCP
PROSITE profilePS5136931.3532381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKRAMEGEIV QVEGGRILRS TGRKDRHSKV YTTKGPRDRR VRLSALTAIQ FYDVQDRLGY  60
DKPSKAVDWL INKAKNVIDK LVELPPWNPN DDIILKNNMP TSIEREVGSS GNISLEPHPL  120
SNFSSRFLAE NSSSDTSYVM PAPEPETSSI IDTSKSFFQM NSGTILMNFL SFPHETMSRD  180
SIQNEDLGLS LHFGANYNPR MANWILPHQQ FLSQREPLQP NISQLTSHAW ELEQPMASAE  240
HKSSISNSHF NGDFQFPARL IQGEEDINGV ICIKPSSGSQ H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624545.11e-167PREDICTED: transcription factor TCP4-like isoform X1
RefseqXP_009624544.11e-167PREDICTED: transcription factor TCP4-like isoform X1
SwissprotQ8LPR57e-49TCP4_ARATH; Transcription factor TCP4
TrEMBLG3BGV03e-82G3BGV0_SOLLC; TCP transcription factor 10
STRINGPGSC0003DMT4000243283e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-50TCP family protein