PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02790g03007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 251aa    MW: 28109.1 Da    PI: 9.4626
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02790g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.74e-33116172158
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               d p+YVNaKQy++I++RRq+Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  Niben101Scf02790g03007.1 116 DGPIYVNAKQYHGIMRRRQTRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 172
                               57****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.8E-36114175IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.027115175IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-23118140IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-28118172IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860120140IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-23149172IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKSLEPDLQS ETLRLTHSTI NSQDEMTASE KTNSQDQCAS SEYDHDERYG REMQDQLKTA  60
LFSSQNEVAH STGFSPFGYS DPYMSGLYTA YGPQAFPQMM GIAPTRVPLP LDLAEDGPIY  120
VNAKQYHGIM RRRQTRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKVNQ  180
SDPNSHPTNS TSSQDSIERE NSTSAFSSVR KDVNNGVSFQ KQPDHRAFGV SSHMAITMQG  240
NGTQQRAPVV R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21118185474NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592750.11e-178PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLA0A1U7V4961e-175A0A1U7V496_NICSY; nuclear transcription factor Y subunit A-7-like
STRINGXP_009592750.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-43nuclear factor Y, subunit A3