PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02744g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 157aa    MW: 17431.4 Da    PI: 7.8432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02744g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-201665255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +ykGVr +k +g+WvAe+r p++   r r++lg+++taeeAa+a++aa  +l+g
  Niben101Scf02744g00004.1 16 RYKGVRMRK-WGKWVAEVRQPKS---RDRIWLGSYDTAEEAARAYDAAVVCLRG 65
                              69*****99.*******999854...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.35E-321675No hitNo description
PROSITE profilePS5103223.2881673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-311674IPR001471AP2/ERF domain
SMARTSM003803.1E-361679IPR001471AP2/ERF domain
PfamPF008471.3E-131665IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-221674IPR016177DNA-binding domain
PRINTSPR003672.8E-101728IPR001471AP2/ERF domain
PRINTSPR003672.8E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVRPKGNQEK KDNGDRYKGV RMRKWGKWVA EVRQPKSRDR IWLGSYDTAE EAARAYDAAV  60
VCLRGPSATI NFPNNPPLIP SSGPNCDQQQ LSPSQIQVAA SRHARRICES AVGTVFFKDN  120
NNSEFGCSYV DCYNLATTDK TSTGDGEVLH DDLFDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1816741473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791847.11e-106PREDICTED: ethylene-responsive transcription factor ERF016-like
RefseqXP_016514523.11e-106PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5914e-35ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A1S4DM941e-105A0A1S4DM94_TOBAC; ethylene-responsive transcription factor ERF016-like
TrEMBLA0A1U7XIG91e-105A0A1U7XIG9_NICSY; ethylene-responsive transcription factor ERF016-like
STRINGXP_009791847.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-27ERF family protein