PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02720g08001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 392aa    MW: 43003.8 Da    PI: 6.7777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02720g08001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-174695255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Niben101Scf02720g08001.1 46 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 95
                              69*******.**********93....35999**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-114695IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2946102IPR001471AP2/ERF domain
SMARTSM003808.8E-3446109IPR001471AP2/ERF domain
PROSITE profilePS5103222.08946103IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2146103IPR016177DNA-binding domain
CDDcd000185.62E-3046102No hitNo description
PRINTSPR003672.3E-94758IPR001471AP2/ERF domain
PRINTSPR003672.3E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEDAMRRLNQ ESDIPLQTTI CTTKRSCGAN KRSLKDGGGS SVGAVRYRGV RRRPWGRYAA  60
EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGVKART NFVYPSSPAQ PTSTNDGLTF  120
LNIPNSFNYT CAKSFPYQAA LKDLSNRQFF HSNYSPSYGS GIRGVNGTTV ATATQKSNDS  180
LNMLLFRELL SPNSSDTTTT SLSPDTGFNS MPLYEQLPLM FSRNNTSISL NSSSSNLINH  240
TSSSSTFLPT TNNAIIPSSS VMTLPKIENV HSINNSTTCI HDDSGMDFFP SEPSDSGLLE  300
EALNGFFPKP KPIKSEPFPS STKGELSEVS NIPQQINDGL NSGFEFSHTS SFPMYHQDFA  360
ANLQMSSGDN MMGDIFQYPD LLNIFAAKLQ NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-2136102271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264879.10.0PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBLA0A314L3590.0A0A314L359_NICAT; Uncharacterized protein
STRINGXP_009765569.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.14e-13DORNROSCHEN-like