PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02702g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 451aa    MW: 49698.2 Da    PI: 7.616
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02702g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.53.9e-09169195132
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfs 32 
                               s+y+GV++++++grW+++I+d        k+f+
  Niben101Scf02702g00005.1 169 SQYRGVTFYRRTGRWESHIWDcG------KQFR 195
                               78*******************33......5553 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.8E-5170210IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-5239283IPR016177DNA-binding domain
CDDcd000181.80E-11239282No hitNo description
SMARTSM003804.1E-9240288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MYFVKGEMLD LNVSAVSVNS NCDETDPNNN TTLFFKDEYS AGTSNTTASS SVVNAPVAGD  60
EDSNSSSVHH GSKWAHHSLS TLNFSILKSD RAIDTEDDMS TDDVLTRQLF PVKNESQGQG  120
TRIQGQSQCW LNLSVPESGG GAEMGIYKPP TPAQQPVKKS RRGPRSRSSQ YRGVTFYRRT  180
GRWESHIWDC GKQFRGVDAD INFNITDYEE DMEQMKNLSK EEFVQVLRRQ STGFSRGNSK  240
YRGVTLHKCG RWEARVGQFL GKKAYDKAAI KCNGREAVTS FEPNTYERDM KEDNKDGSGQ  300
NLDLNLWISP PLAGPKRDEI GRNVPFNFGA HEMVIGRRLE VENSSTAPQG APTASKLSVL  360
TGVYPGFSPH NMEGAMAKVE ATSSPGFPNW AWKIHSQGLI TPVPVFSSSA ASSGFSTTTT  420
LYPSTLLLPS NQLRLPTNST FQHPPVTLNI S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475255.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
TrEMBLA0A1S4AEY80.0A0A1S4AEY8_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009772737.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-76related to AP2.7