PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02594g05001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 107aa    MW: 12430.9 Da    PI: 6.5008
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02594g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12247245
                              SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                               +WT+ E +++ +a +++ ++   +W+ Iar++g g+++++++ ++ 
  Niben101Scf02594g05001.1  2 SNWTAKENKKFEEALALYDKDtcdRWNNIARCVG-GKSAEEVRRHYE 47
                              58********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.616154IPR017884SANT domain
SMARTSM007174.6E-9152IPR001005SANT/Myb domain
PfamPF002494.3E-10347IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-6348IPR009057Homeodomain-like
CDDcd001671.85E-9350No hitNo description
SuperFamilySSF466895.68E-14357IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MSNWTAKENK KFEEALALYD KDTCDRWNNI ARCVGGKSAE EVRRHYELLV KDIMQIENDQ  60
VPLPNYTTAG SDGRSYANEQ RYCNSLPLTQ ITHCARTLQK YSWLDPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-294841189RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761204.11e-54PREDICTED: protein RADIALIS-like 1
RefseqXP_016481457.11e-54PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB81e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A314KS004e-65A0A314KS00_NICAT; Protein radialis-like 1
STRINGXP_009761204.14e-54(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-33RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]