PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02585g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 184aa    MW: 20409.7 Da    PI: 7.4203
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02585g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.22.1e-4111110199
                    DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +CaaCk+lrrkC ++ C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAea ++dPvyG+vg i+ lq
  Niben101Scf02585g00001.1  11 PCAACKFLRRKCLPGnCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEAHIKDPVYGCVGAISVLQ 95 
                               7***********8855********************************************************************* PP

                    DUF260  85 qqleqlkaelallke 99 
                               +q+ +l++el+++++
  Niben101Scf02585g00001.1  96 RQVIRLQKELDATNA 110
                               **********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.66110112IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-4111109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MASSSSYSNP PCAACKFLRR KCLPGNCIFA PYFPPEEPTK FANVHKIFGA SNVSKLLNEI  60
QPHQREDAVN SLAYEAEAHI KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYINLSG  120
GSMNNQMVNQ QRSNLNYGRR IDGTTTGSDQ NYVFCVPSYN SHNTWNSNTI SGNHNPEADN  180
DSSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-6321152114LOB family transfactor Ramosa2.1
5ly0_B1e-6321152114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227086.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_019227087.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_019227088.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_019227089.11e-127PREDICTED: LOB domain-containing protein 25-like
RefseqXP_019227090.11e-127PREDICTED: LOB domain-containing protein 25-like
SwissprotQ8L8Q35e-67LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A314KSB51e-126A0A314KSB5_NICAT; Lob domain-containing protein 25
STRINGXP_009597524.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-69LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]