PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02517g15003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 385aa    MW: 44768.1 Da    PI: 4.4011
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02517g15003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix452.9e-14105190286
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               W+++e  +L+e+  e+  +l+r++l++ +W ev++k+ +  g+e+s ++C++ ++ l+k+ykk+ + ++k   + +s++p+f+++
  Niben101Scf02517g15003.1 105 WSEEESFVLLEVWGERYLELGRRSLRAEDWVEVAEKVtEMIGVEKSEIECRNQLDVLKKKYKKEITKMEKTGGGFHSKWPFFKKM 189
                               *************************************5568**********************99999988899999******** PP

                  trihelix  86 e 86 
                               +
  Niben101Scf02517g15003.1 190 D 190
                               7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-19104190No hitNo description
PROSITE profilePS510298.601105197IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDDSDDETRY PSRPNSIYSS SLRSRRSIRN PSSYSRNTHY YGYNNNEFQY DDDDESDEEE  60
AEQEFSSGEN GYHSFQKRRK LETLVSNYEF APRSGSSHSS KGGMWSEEES FVLLEVWGER  120
YLELGRRSLR AEDWVEVAEK VTEMIGVEKS EIECRNQLDV LKKKYKKEIT KMEKTGGGFH  180
SKWPFFKKMD ILMNLRMKGH CGLGCGLDSG EYVFMDPRMY LDRSNVLDEM RDSPAGSDAD  240
NDEEEEVEGL GSGGWEGDNE SVKLLAESIQ RFGQIYEKIE NSKRKQMMEL EKMRRDFQRE  300
LELQKKQIVE RAQEEIAKIR DNDDDEDNGD EDDEETDNIS GNEKLVILNS WAQEFLYNLS  360
DTIPFTPRLG INVGSIYKDF GFVHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783625.10.0PREDICTED: uncharacterized protein LOC104232187 isoform X1
RefseqXP_009783626.10.0PREDICTED: uncharacterized protein LOC104232187 isoform X2
RefseqXP_016496917.10.0PREDICTED: trihelix transcription factor ASIL1-like isoform X1
RefseqXP_016496918.10.0PREDICTED: trihelix transcription factor ASIL1-like isoform X2
TrEMBLA0A1S4C6R00.0A0A1S4C6R0_TOBAC; trihelix transcription factor ASIL1-like isoform X1
TrEMBLA0A1S4C7020.0A0A1S4C702_TOBAC; trihelix transcription factor ASIL1-like isoform X2
TrEMBLA0A1U7X1T40.0A0A1U7X1T4_NICSY; uncharacterized protein LOC104232187 isoform X2
TrEMBLA0A1U7XAZ10.0A0A1U7XAZ1_NICSY; uncharacterized protein LOC104232187 isoform X1
STRINGXP_009783625.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120602022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-75Trihelix family protein