PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02416g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 194aa    MW: 21608.5 Da    PI: 8.6076
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02416g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like40.84.8e-134266125
                   G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                              kprlrWt eLHerFv+av+qLGG++
  Niben101Scf02416g00004.1 42 KPRLRWTAELHERFVDAVTQLGGPD 66
                              79*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-123974IPR009057Homeodomain-like
SuperFamilySSF466898.6E-54170IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-74267IPR006447Myb domain, plants
PfamPF143793.6E-27125171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MKMYSALPFG MEGNAVGGGS GGVGEYQNIL GDAYLVLTAD QKPRLRWTAE LHERFVDAVT  60
QLGGPDILAK QKNIRIRKYR LGKQSKEVAE NYKDASCVAE SQDTGSSASG SSKVVTQYIN  120
VSGYQVTEAF RVQMEVQRRL HEQLEVQRHV QLRIEAQGKY LQTILEKACK ALNYKAMASP  180
DLDSAREQLS ELTY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257406.11e-111PREDICTED: protein PHR1-LIKE 3-like isoform X1
SwissprotQ94A577e-72PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A1S3ZSV71e-108A0A1S3ZSV7_TOBAC; myb family transcription factor APL-like isoform X1
TrEMBLA0A1U7XTG21e-108A0A1U7XTG2_NICSY; myb family transcription factor APL-like isoform X1
STRINGXP_009794233.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.12e-67G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]