PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02272g03001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 324aa    MW: 34874.6 Da    PI: 8.4988
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02272g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.94.3e-3941171589
                       TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                               k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++ ++tieWLlqqa+p+i+++tgt++++a+++  ++s +ss+ + s++
  Niben101Scf02272g03001.1  41 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSEGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSVRSSGTTISAP 125
                               899***************************************************************9997666666666633333 PP

                       TCP  89 .............................................k 89 
                                                                            +
  Niben101Scf02272g03001.1 126 psksaplfihggpttmlgfhhplsntsfgqdpdenymkkryredtS 171
                               5555667777777777776666666666654444444333333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3744195IPR005333Transcription factor, TCP
PROSITE profilePS5136927.0714498IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEFREPNSKN QGGSTSRSDH PNDNKSDNNN NNLVISTKVV KKPSKDRHTK VDGRGRRIRM  60
PALCAARVFQ LTKELGHKSE GETIEWLLQQ AEPSIIAATG TGTIPANFST LNVSVRSSGT  120
TISAPPSKSA PLFIHGGPTT MLGFHHPLSN TSFGQDPDEN YMKKRYREDT SGATSPPSAT  180
KPEKTGGQAH EPDQESKPGS SHASSYIPAP AMWAVAPASG NVGNTFWMVP STSSTMQRIG  240
GFEFPGGGRF SPVQLGSMFL QQPQPVQQLG LGVLETNLGM LASMNAYNIR GTGIDLGMNL  300
EQHQHHNQQQ GSDSGDENHK DSQS
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240624.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5183e-67TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1J6K4U80.0A0A1J6K4U8_NICAT; Transcription factor tcp8
STRINGXP_009803421.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.13e-60TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]