PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02253g09003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 240aa    MW: 27092.7 Da    PI: 6.8821
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02253g09003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.35.1e-38101101100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 
                               aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+l++l++++ + da++s+++e++++ r PvyG+v+ i +l+
  Niben101Scf02253g09003.1  10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILRQLDDDDqKADAVKSIIFESDMWERFPVYGCVEYICHLR 94 
                               7************************************************655549****************************** PP

                    DUF260  85 qqleqlkaelallkee 100
                               qql+ + +el+++ ++
  Niben101Scf02253g09003.1  95 QQLQLALEELHYVYAQ 110
                               *********9998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0179111IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-3710106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILRQLDD  60
DDQKADAVKS IIFESDMWER FPVYGCVEYI CHLRQQLQLA LEELHYVYAQ LALHKEQQQQ  120
QLALQCGVIS KIPFVNGISM GPFSTSEGES SEGGQKTNLL GSHSLFDHTN SITFPASDHA  180
IFGFGVRDDQ RDISHEYECL ITPFNNIMAD DRQSYVGTKE ASPNHLGRIH NHSRICLRMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2421334123LOB family transfactor Ramosa2.1
5ly0_B2e-2421334123LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434883.11e-148PREDICTED: LOB domain-containing protein 2-like
TrEMBLA0A1S3X5921e-147A0A1S3X592_TOBAC; LOB domain-containing protein 2-like
STRINGXP_009768780.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-36LOB domain-containing protein 27