PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02220g04002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 423aa    MW: 49038.7 Da    PI: 6.3158
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02220g04002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.7e-2498193186
                  trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                               +Wt+q+v++Li+a+++++e+  ++           kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e+
  Niben101Scf02220g04002.1  98 KWTDQMVRLLITAVSYIGEETAAEYggrrkcsnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEV 182
                               7**************999988864223344567799********************************************66999 PP

                  trihelix  76 sstcpyfdqle 86 
                               +++ +++d l+
  Niben101Scf02220g04002.1 183 VEKPALLDVLD 193
                               99998888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2296219No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MTPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT ISSMQQDCNQ NISLADHSKG  60
ERGKSASDED EPSFIEDAAD GLNDLNRGKK VTPWQRVKWT DQMVRLLITA VSYIGEETAA  120
EYGGRRKCSN LHKKGKWKSV SKVMAERGHF VSPQQCEDKF NDLNKRYKRL NEILGRGTSC  180
EVVEKPALLD VLDHVSEKGK EEVRKILSSK HLHYEEMCSY HNGNRLHLPP DLELQHSLHL  240
ALTSRDEHDD NDVRKHLQDD NDEDDHETDV VEDQDEFEEN HSLPREHRLH GMSGGFSKRI  300
KQCQGHEIVT FGNSLTTLDG NRTFSSQPQK ANTDANQMFS ECNNADILQK QWMDHRSFQL  360
EEQKLQIQAR MLELEKERFN WKRFSRKKDI ELEIMRMEND RIKLENECMA LELKRKEMLA  420
ENL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590352.10.0PREDICTED: uncharacterized protein LOC104087550 isoform X1
TrEMBLA0A1S3ZB380.0A0A1S3ZB38_TOBAC; uncharacterized protein LOC107784772 isoform X1
STRINGXP_009590352.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-145sequence-specific DNA binding transcription factors