PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02188g02025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 438aa    MW: 47234.6 Da    PI: 7.7813
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02188g02025.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.21.2e-3769151283
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                               a+k+++++++hTkv+gR+RR+R++ +caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+   ++ss+s++ 
  Niben101Scf02188g02025.1  69 APKRSSNKDRHTKVEGRGRRIRMPGLCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGNGTIPASALaATGSSVSQQR 151
                               789******************************************************************88854444444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-3174159IPR005333Transcription factor, TCP
PROSITE profilePS5136927.08775129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVFKQTHLFM DPKGSNQTLE ELSNFLSHPN PKNINTNNSS NMGENNPVEI KDFQIGNSDK  60
DETKKQQLAP KRSSNKDRHT KVEGRGRRIR MPGLCAARIF QLTRELGHKS DGETIQWLLQ  120
QAEPSIIAAT GNGTIPASAL AATGSSVSQQ RISVSAGLQQ KMGELSGSIS SNSFCRTNWP  180
MVYGNFGRSH LASTGIWPPS TTNLATESSN YLQKITSFPG FDLPATNLNP MSFTSMLGAA  240
NPQQLPGLEL GLSQDTHIGA EPSIIAATGN GTIPASALAA TGSSVSQQRI SVSAGLQQKM  300
GELSGSISSN SFCRTNWPMV YGNFGRSHLA STGIWPPSTT NLATESSNYL QKITSFPGFD  360
LPATNLNPMS FTSMLGAANP QQLPGLELGL SQDTHIGGLN LQSLSQIYHQ MEHSRMHHSQ  420
QQQQNQHQQL SPEDDSQG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757310.11e-161PREDICTED: transcription factor TCP20 isoform X2
SwissprotQ9LSD52e-59TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A1U7V6F61e-160A0A1U7V6F6_NICSY; transcription factor TCP20 isoform X2
STRINGXP_009757309.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.11e-61TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]