PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02164g06008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 359aa    MW: 39568.3 Da    PI: 5.0248
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02164g06008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27e-16235270134
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg
  Niben101Scf02164g06008.1 235 CHHCGVSEtcTPAMRRGPDGPRTLCNACGLKWANKG 270
                               ********************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.2E-797132IPR010399Tify domain
PROSITE profilePS5132012.45297132IPR010399Tify domain
PfamPF062004.1E-9101131IPR010399Tify domain
PROSITE profilePS5101712.689162204IPR010402CCT domain
PfamPF062031.0E-14162203IPR010402CCT domain
SMARTSM004014.1E-14229282IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-11232282No hitNo description
PROSITE profilePS501149.13234287IPR000679Zinc finger, GATA-type
CDDcd002024.87E-16234281No hitNo description
Gene3DG3DSA:3.30.50.105.6E-14234276IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440235262IPR000679Zinc finger, GATA-type
PfamPF003206.5E-14235270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSSDHPTEGF HVLITGFQFH GVYIDIYRES IMMAANPRPL QARLYEDHAP LQSIQMEEDD  60
DGTYEDDGGE ETMDEAEEIR TKVFNHHQYG GGGGVVEVSR SSELTLAFEG EVYVFPAVTP  120
EKVQAVLLLL GGCDIPTAVP TVEVPFDNKV EDFPKQVNLS RRFASLVRFR EKRKERCFDK  180
KIRYSVRKEV AQRMHRKNGQ FASLKESSGS SSCDSAKSSL EGDGTQHSET VPGKCHHCGV  240
SETCTPAMRR GPDGPRTLCN ACGLKWANKG ILRDLSKRGR KISVEPKELG TPENPMKAFA  300
EGSLDHCADV EKNLFNAGSN LANEIPAGII SSSDLVEEET LVDIGNASKT EIDIPANFD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759907.10.0PREDICTED: GATA transcription factor 24-like
RefseqXP_016508029.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ8GXL71e-68GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0V0I6Z50.0A0A0V0I6Z5_SOLCH; Putative GATA transcription factor 24-like
STRINGSolyc04g076530.2.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-59ZIM-like 1