PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02025g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 105aa    MW: 11610.4 Da    PI: 8.5051
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02025g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP57.55.4e-181672273
                       TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa.sec 73
                              +Rls+++a+++F  qd L fdk+skt+eWLl+++k a+ e ++                + +s  sec
  Niben101Scf02025g00006.1  1 MRLSLDVARKIFNCQDLLAFDKASKTVEWLLTKSKSAVNEVVQGinkencsaatigvisT-PSTtSEC 67
                              8*****************************************997766666666655531.2222344 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-20181IPR005333Transcription factor, TCP
PROSITE profilePS5136921.581141IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MRLSLDVARK IFNCQDLLAF DKASKTVEWL LTKSKSAVNE VVQGINKENC SAATIGVIST  60
PSTTSECEVV SGIDESTTIN DIQKQPLKLR IKLTITEQMR RIANL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787900.19e-44PREDICTED: transcription factor TCP12-like
RefseqXP_016434825.19e-44PREDICTED: transcription factor TCP12-like
TrEMBLA0A1S3X4A52e-42A0A1S3X4A5_TOBAC; transcription factor TCP12-like
TrEMBLA0A1U7XN352e-42A0A1U7XN35_NICSY; transcription factor TCP12-like
TrEMBLQ6Y9W11e-44Q6Y9W1_NICSY; TCP protein (Fragment)
STRINGXP_009787900.13e-43(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-15TCP domain protein 12