PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01991g05013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 151aa    MW: 16759.4 Da    PI: 9.3756
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01991g05013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.91e-304106198
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p+  r+++++sl+yeA+ r+ +P+yG+vg++
  Niben101Scf01991g05013.1   4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPDPLRPAIFRSLLYEACGRIVNPIYGSVGLL 88 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaelallk 98 
                               +++++ql+q ++e +l +
  Niben101Scf01991g05013.1  89 WSGNWQLCQNAVEDVLKG 106
                               *********999877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4923109IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-244101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPDP  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EDVLKGAPIT PITSEVAVNN  120
NGPPLKLPYD IRHINKDDNA IKSNDLHRFK K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495337.11e-105PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-82LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S4C2G11e-104A0A1S4C2G1_TOBAC; LOB domain-containing protein 41-like
STRINGXP_009801662.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-85LOB domain-containing protein 41