PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01670g05002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 475aa    MW: 53976.7 Da    PI: 8.1509
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01670g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1102.25.1e-3235126291
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                               fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r+ tr+gCka l vk +++gkw+v+++++e
  Niben101Scf01670g05002.1  35 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSSFVKE 119
                               9***************************************998888545677889****************************** PP

                      FAR1  85 HnHelap 91 
                               HnHel+p
  Niben101Scf01670g05002.1 120 HNHELVP 126
                               *****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-3035126IPR004330FAR1 DNA binding domain
PfamPF044346.6E-13229275IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.288241277IPR007527Zinc finger, SWIM-type
SMARTSM005755.5E-10252279IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSCFAAVRSY SPQGDLDLEP YEGLEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRKDGA  60
IIQRSFVCAK EGFRNLNEKR TKDREIKRPR TITRVGCKAA LSVKIQDSGK WVVSSFVKEH  120
NHELVPPDQV HCLRSHRQIS GPAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD  180
CLLKTPSPME KQASEVYTRK LFMRFQEELV GTLTFMANKV EDDGLVTTYQ VAKFGDDYRA  240
YYVRFNVLEM KATCSCQMFQ FSGLLCRHIL AVFRVTNVLT LPSHYILKRW SRSAKSSVAL  300
DDRVSDVINY YLESHTVRYN ILRHEAFKFV EEGAESVDSY AVAMAALEVA LNKVALAAKH  360
DGRISLVNGH CREYLTRNGV HANYNIEDEQ RSLACPLSEV ERFDMTFDAM GIDLSVDEDD  420
MDAKIQELSY LLDCANRKCE IYRANLYSVL KDIEDHKQQL SIKVQNIKLS LKDGL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758605.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_016461330.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_019263777.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_019263778.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL81e-100FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S3ZA490.0A0A1S3ZA49_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7V9U10.0A0A1U7V9U1_NICSY; protein FAR1-RELATED SEQUENCE 5
STRINGXP_009758605.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]