PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01607g03003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 218aa    MW: 25226.3 Da    PI: 8.4401
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01607g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.23.6e-359104195
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 
                               aCa+Ck++r+kC+++Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e++ r++a++sl++eA +r++dPv G +g ++++ 
  Niben101Scf01607g03003.1   9 ACASCKHQRKKCTENCVLAPYFPAEKSREFKAVHKVFGVSNITKIVKNLKEDHdRRNAVESLIWEAVCRLNDPVFGPYGEYKRIY 93 
                               7************************************************66555******************************* PP

                    DUF260  85 qqleqlkaela 95 
                               ++l+  k++ +
  Niben101Scf01607g03003.1  94 EELKLYKSQYQ 104
                               ***99998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.3768110IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-349105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MQKPSGTAAC ASCKHQRKKC TENCVLAPYF PAEKSREFKA VHKVFGVSNI TKIVKNLKED  60
HDRRNAVESL IWEAVCRLND PVFGPYGEYK RIYEELKLYK SQYQQILQMP ISQESNNNGI  120
VYEATTQGLI NGWNINKRND NNLLYINENS TVESWSSYNN KNDPLHHHVQ NIEKLRTESN  180
NGSIFIVPQP QAYNEFNQQY FLAGQYNPID SKSRESML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-23487688LOB family transfactor Ramosa2.1
5ly0_B3e-23487688LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770460.11e-152PREDICTED: LOB domain-containing protein 2-like
TrEMBLA0A1U7W8841e-151A0A1U7W884_NICSY; LOB domain-containing protein 2-like
STRINGXP_009770460.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-41LOB domain-containing protein 2