PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01462g01002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 233aa    MW: 26427.2 Da    PI: 9.9768
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01462g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.61.7e-1714803091
                      FAR1 30 krtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                              +r fvC +eg+r e++k        + +r+raetr+gCka+l+v+ ++ ++w+v+ +++eHnHel+p
  Niben101Scf01462g01002.1 14 DRSFVCAREGFRVEKEKPgrdggGARIKRPRAETRVGCKAMLVVNIQNMARWVVSGFVKEHNHELVP 80
                              689***********99999999999999*************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-141480IPR004330FAR1 DNA binding domain
PfamPF105515.0E-13184232IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
LWKIELEPLG IRNDRSFVCA REGFRVEKEK PGRDGGGARI KRPRAETRVG CKAMLVVNIQ  60
NMARWVVSGF VKEHNHELVP PDKVHCLRSH RHVSGPAKSL IDTLQGAGIG PSGIMSALIM  120
EYGGIRSRTP GVDPQTLLDY LKQKHLENRS FFYSIQGDED HCMSNIFWAN PKARTNFSNY  180
GDTVTFDTTY RSNRYRLPFA PFTRVNHHGQ PVLFGCTFLI NESKASFSWL FST
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775261.11e-143PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL81e-100FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1U7WDD41e-142A0A1U7WDD4_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_009775261.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]