PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01448g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 188aa    MW: 20702.1 Da    PI: 7.786
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01448g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.22.5e-4211110199
                    DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +CaaCk+lrrkC ++ C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq
  Niben101Scf01448g00003.1  11 PCAACKFLRRKCLPGnCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQ 95 
                               7***********8855********************************************************************* PP

                    DUF260  85 qqleqlkaelallke 99 
                               +q+ +l++el+++++
  Niben101Scf01448g00003.1  96 RQVIRLQKELDATNA 110
                               **********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.08610112IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4111109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASSSSYSNP PCAACKFLRR KCLPGNCIFA PYFPPEEPTK FANVHKIFGA SNVSKLLNEI  60
QPHQREDAVN SLAYEAEARM KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYINPSG  120
GSINNQITVN QQRSNLNIYG RRMGPVDGTT TGFDQNYGFC TPNYSPNTWN NTTISGNHNP  180
GGDDDSSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-6421292128LOB family transfactor Ramosa2.1
5ly0_B3e-6421292128LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766717.11e-126PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_009766723.11e-126PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_016507963.11e-126PREDICTED: LOB domain-containing protein 25-like isoform X1
SwissprotQ8L8Q34e-67LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A1S4D3Q41e-124A0A1S4D3Q4_TOBAC; LOB domain-containing protein 25-like isoform X1
TrEMBLA0A1U7VF651e-124A0A1U7VF65_NICSY; LOB domain-containing protein 25-like isoform X1
STRINGXP_009766717.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-69LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]