PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01435g02002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 324aa    MW: 37137.5 Da    PI: 7.4996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01435g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.71.4e-50151441128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratk 79 
                               +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++       +   +++wyfFs++dkky+tg+r+nrat+
  Niben101Scf01435g02002.1  15 VPPGFRFHPTEEELLHYYLRKKVACEKIDL-DVIRDVDLNKLEPWDIQEkcriG--GstPQNDWYFFSHKDKKYPTGTRTNRATA 96 
                               69****************************.9***************9534332..222556*********************** PP

                       NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +g+Wkatg+dk +++ + + +g++ktLvfykgrap+g+k+dW++heyrl
  Niben101Scf01435g02002.1  97 AGFWKATGRDKVIHT-NCKRIGMRKTLVFYKGRAPHGQKSDWIVHEYRL 144
                               *************99.8889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-5610175IPR003441NAC domain
PROSITE profilePS5100555.19215175IPR003441NAC domain
PfamPF023651.6E-2616144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSKDMNLSVN GQSQVPPGFR FHPTEEELLH YYLRKKVACE KIDLDVIRDV DLNKLEPWDI  60
QEKCRIGGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIH TNCKRIGMRK  120
TLVFYKGRAP HGQKSDWIVH EYRLDDNMTN PQDAVNASEP SSPEEGWVVC RVFKKKNYHK  180
ALESPHQNSS AVSIMNSRTL IQKPNNDGVL DQILMYMGRS SCKQHDQENK HNINFVNNIN  240
NIHLDDHHMQ INSNSFINTN SSSSSRFLHL PGLENHHSPT TNMDDDVSFL QLIQQDCSFG  300
HENMLTETEP SSGSVMDFGR HPPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-481217714167NO APICAL MERISTEM PROTEIN
1ut4_B2e-481217714167NO APICAL MERISTEM PROTEIN
1ut7_A2e-481217714167NO APICAL MERISTEM PROTEIN
1ut7_B2e-481217714167NO APICAL MERISTEM PROTEIN
3swm_A3e-481217717170NAC domain-containing protein 19
3swm_B3e-481217717170NAC domain-containing protein 19
3swm_C3e-481217717170NAC domain-containing protein 19
3swm_D3e-481217717170NAC domain-containing protein 19
3swp_A3e-481217717170NAC domain-containing protein 19
3swp_B3e-481217717170NAC domain-containing protein 19
3swp_C3e-481217717170NAC domain-containing protein 19
3swp_D3e-481217717170NAC domain-containing protein 19
4dul_A2e-481217714167NAC domain-containing protein 19
4dul_B2e-481217714167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258933.10.0PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP61e-112NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A314LF650.0A0A314LF65_NICAT; Nac domain-containing protein 43
STRINGXP_009774438.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-103NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]