PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01393g01001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 597aa    MW: 65273.4 Da    PI: 5.7164
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01393g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23118220199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+ltpsd+++ g +++p+ +a+++        +++ +   l ++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD
  Niben101Scf01393g01001.1 118 FVKILTPSDANNGGGFSVPRFCADSIfprlnfvAEPPVQ--NLFIRDIHGCVWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGD 200
                               89*********************999*****98666666..6******************************************* PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               + vF ++  +++el+v+v+r+
  Niben101Scf01393g01001.1 201 SAVFARKT-NTGELYVGVRRA 220
                               *****544.9999******97 PP

2Auxin_resp84.22.7e-28264347183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa+ a+ +++Fev  +Pra++++Fvv++e ve++ +v ++vGmR+kma+etedss++ + +Gtv++v+  ++  W++S+Wr+L+
  Niben101Scf01393g01001.1 264 AAEMAARGMAFEVSCYPRAGWADFVVRAEAVEASSTVFWTVGMRVKMAVETEDSSRTACfQGTVSSVNLPQSGPWRGSPWRMLQ 347
                               6889999***************************************************99**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-29107242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-32110223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-21117219No hitNo description
PfamPF023621.1E-21118220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872118221IPR003340B3 DNA binding domain
SMARTSM010194.5E-19118221IPR003340B3 DNA binding domain
PfamPF065079.5E-26264347IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MPPSTTAAPP VSNDVDPTVW KAIAGNSVQI PTVGTRVYYF PQGHAEHANC GSPIFISSLV  60
PPFILCRVLS VSFLADSVTD EAYAKIFLLP INQREDNNDI AVNMNGDVED AEKEVVSFVK  120
ILTPSDANNG GGFSVPRFCA DSIFPRLNFV AEPPVQNLFI RDIHGCVWEF RHIYRGTPRR  180
HLLTTGWSKF VNSKKLVAGD SAVFARKTNT GELYVGVRRA TRGNDICERW NSTVLRSTEQ  240
TSSGGEVRWR TGQGRVATEA IVEAAEMAAR GMAFEVSCYP RAGWADFVVR AEAVEASSTV  300
FWTVGMRVKM AVETEDSSRT ACFQGTVSSV NLPQSGPWRG SPWRMLQINW DEPEVLQYAK  360
RVNPWQVECI LPTPQLHSGF PPSKKIKLPN GLLPDGEEKF FFPMTGLSNP LIGLCSPSLG  420
NYAYFPAGMQ GARQNQICVS SLSNVKSNNN LGLGTDNSLD EEFKPKLESV STKLNIGSSY  480
SDNFSPDSQS SVHFCDNELV AKPGSSSLTK VRVNSFQLFG KVIHVEPVEG GFDGFGCSEN  540
DSIEVFKEID GAAKSNISLS KPYIELFDSL DVQQQRASAV SKEGADSSSG SIGRDYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A4e-681936823353Auxin response factor 1
4ldw_A4e-681936823353Auxin response factor 1
4ldw_B4e-681936823353Auxin response factor 1
4ldx_A5e-681936823353Auxin response factor 1
4ldx_B5e-681936823353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233424.10.0PREDICTED: auxin response factor 17
SwissprotQ84WU61e-170ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1J6KFA80.0A0A1J6KFA8_NICAT; Auxin response factor
STRINGXP_009791106.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-171auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]