PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01350g07008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 449aa    MW: 50881.9 Da    PI: 8.4573
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01350g07008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-20141189355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  Niben101Scf01350g07008.1 141 YRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFVTAEEAARAYDRAAIEFRG 189
                               9*******.**********94....36************************998 PP

2AP263.25.7e-20315363355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  Niben101Scf01350g07008.1 315 YRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFVTAEEAARAYDRAAIEFRG 363
                               9*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-31140197IPR001471AP2/ERF domain
CDDcd000184.42E-33140196No hitNo description
PROSITE profilePS5103224.671140197IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-22140198IPR016177DNA-binding domain
PfamPF008474.8E-14140189IPR001471AP2/ERF domain
SMARTSM003805.2E-38140203IPR001471AP2/ERF domain
PRINTSPR003672.5E-11141152IPR001471AP2/ERF domain
PRINTSPR003672.5E-11163179IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-22314372IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-31314371IPR001471AP2/ERF domain
PfamPF008474.8E-14314363IPR001471AP2/ERF domain
CDDcd000184.42E-33314370No hitNo description
SMARTSM003805.2E-38314377IPR001471AP2/ERF domain
PROSITE profilePS5103224.671314371IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MQSSTNIRLK QESTYDNHRH HLPPPRLTAE QEFSVMVEAL KNVITGNTTP IHSNSELNSF  60
GCIQNVISTP SFSSSPSTSM SSFEPPLLRF IDEPEPCNFC GIKGCLGCDY FGTTTTTDNN  120
NNNNKKTKKI SVVKKKKKNN YRGVRQRPWG KWAAEIRDPR KAARVWLGTF VTAEEAARAY  180
DRAAIEFRGP RAKLNFSFSD YTLIQEQSTP SSFPQNQQPE SQFEQGNADV KMEMSKLDND  240
FWDQLMGDNE IQRWLTIMDF SGGSSDFAEP CNFCGIKGCL GCDYFGTTTT TDNNNNNNKK  300
TKKISVVKKK KKNNYRGVRQ RPWGKWAAEI RDPRKAARVW LGTFVTAEEA ARAYDRAAIE  360
FRGPRAKLNF SFSDYTLIQE QSTPSSFPQN QQPESQFEQG NADVKMEMSK LDNDFWDQLM  420
GDNEIQRWLT IMDFSGGSSD FAGANVLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22140370259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-22137370262ATERF1
3gcc_A5e-22137370262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485767.11e-151PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ063e-31EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1S4BA871e-150A0A1S4BA87_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009784619.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-26redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]