PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01290g01011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 195aa    MW: 21124 Da    PI: 8.4811
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01290g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.21.9e-26261131100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk            ++p  +r da++slvyeA++r+rdPvyG++g i++lqq
  Niben101Scf01290g01011.1  26 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHK------------EVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQ 98 
                               7********************************96............99************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               ql++l+ael+++++e
  Niben101Scf01290g01011.1  99 QLQTLQAELNAIRSE 113
                               **********99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.56625114IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-2626111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
LHMQQQMGRR HILGPAAVTT LNTITPCAAC KLLRRRCAEE CPFSPYFSPH EPHKFAAVHK  60
EVPVGQRADA ANSLVYEANV RLRDPVYGCM GAISTLQQQL QTLQAELNAI RSEILRYKYR  120
EAANSLIASI STSVADQLPQ APPTPPPPPP PLPSVVVVSS SSSTSSISSL YTPPSSVAAN  180
FSATIHNNSI SYFDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-35161211118LOB family transfactor Ramosa2.1
5ly0_B5e-35161211118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800766.11e-100PREDICTED: LOB domain-containing protein 15-like isoform X1
RefseqXP_016494817.11e-100PREDICTED: LOB domain-containing protein 15-like isoform X1
SwissprotQ9AT616e-59LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A1S4C0Z11e-98A0A1S4C0Z1_TOBAC; LOB domain-containing protein 15-like isoform X1
TrEMBLA0A1U7YFN41e-98A0A1U7YFN4_NICSY; LOB domain-containing protein 15-like isoform X1
STRINGXP_009800766.12e-99(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.17e-58LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]