PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01212g03007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 397aa    MW: 44683.2 Da    PI: 7.1094
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01212g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.77.4e-2832129196
                    DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 
                               aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f  vhk+FG snv+k +k+l++   +++a++s ++eA+ +++dPv+G +g ++kl
  Niben101Scf01212g03007.1  32 ACASCKHQRKKCIEGeCVMWRHFPASKMDEFLGVHKVFGISNVTKKIKSLDDVAeQDEAIKSFFWEARLWQEDPVHGPLGKYKKL 116
                               7***********9866**********************************766549***************************** PP

                    DUF260  84 qqqleqlkaelal 96 
                               +qql++l +e   
  Niben101Scf01212g03007.1 117 EQQLKELMEEKRI 129
                               ******9988665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.01331134IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-2832127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSDNKNNNVE EAGTEAADAV ESHEVAGSNR PACASCKHQR KKCIEGECVM WRHFPASKMD  60
EFLGVHKVFG ISNVTKKIKS LDDVAEQDEA IKSFFWEARL WQEDPVHGPL GKYKKLEQQL  120
KELMEEKRIK ELQIVQLPDV PCPPTASEIS CLDEMVARRQ ISTISTLSDQ EDYLLNSTAP  180
NYCTLLQGRG VFPSHYNNPI EQRQNTLIPR QVFQGVQFQQ YPCRTLQAEG RGISHLANYN  240
GHVQLHQQRC LHNNIDLGQG ITRGRRRKEC SDLQLVSPSC IGRHVRGRGI EPISSGGRHG  300
AIMSTSSSAS FADQWTDNSN KTMLRDTTGG RHCEVTIPLP SAVQNIAADG SNRRAEDFQH  360
HFTNYNHNNL PVEGYFRPTL EGCPLMWLPC HSHVDAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-14271267103LOB family transfactor Ramosa2.1
5ly0_B4e-14271267103LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769644.11e-136PREDICTED: uncharacterized protein LOC104220462
TrEMBLA0A1J6ITB10.0A0A1J6ITB1_NICAT; Lob domain-containing protein 2
STRINGXP_009619683.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140941012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-17LOB domain-containing protein 2