PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01212g03005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 181aa    MW: 20356.9 Da    PI: 7.8196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01212g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1856108156
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 
                               ++y+GVr+++ +g+++AeIrd      ++ +r++lg+f ta+eAa a+++a+ +++g+
  Niben101Scf01212g03005.1  56 KKYRGVRQRP-WGKYAAEIRD----SaRHgARVWLGTFETAQEAALAYDRAAFRMRGA 108
                               59********.**********....33236**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-3156115No hitNo description
SuperFamilySSF541718.5E-2357116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-3157116IPR001471AP2/ERF domain
PROSITE profilePS5103223.30157115IPR001471AP2/ERF domain
SMARTSM003806.3E-3557121IPR001471AP2/ERF domain
PfamPF008474.1E-1457107IPR001471AP2/ERF domain
PRINTSPR003673.4E-115869IPR001471AP2/ERF domain
PRINTSPR003673.4E-118197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVPTPQTDLP LDENDSQEMI LYEVLHEANA INIPYLPQRN QLLPKTVLRP SQVMGKKYRG  60
VRQRPWGKYA AEIRDSARHG ARVWLGTFET AQEAALAYDR AAFRMRGAKA LLNFPSEVVT  120
ASTSVDRLLL RPPSLSSDSY TNSNHSNSSS NEVSSGKINA FESRISTEDI KTEYMENFLA  180
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3355118366ATERF1
3gcc_A2e-3355118366ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487471.11e-104PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046815e-93PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A1S4BF731e-102A0A1S4BF73_TOBAC; pathogenesis-related genes transcriptional activator PTI5-like
STRINGXP_009776178.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-39ethylene response factor 1