PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01126g03004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 153aa    MW: 16451.7 Da    PI: 10.16
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01126g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-192963135
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                              C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Niben101Scf01126g03004.1 29 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 63
                              ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.6242359IPR000679Zinc finger, GATA-type
SMARTSM004019.0E-152373IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-122563No hitNo description
CDDcd002026.25E-122863No hitNo description
Gene3DG3DSA:3.30.50.101.5E-152863IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PfamPF003204.0E-172963IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDLSDKGGGS EDMMSQTERE NSESQLKTCA DCGTTKTPLW RGGPAGPKSL CNACGIRSRK  60
KRRALLGLNK EDKKLKRSSE NKNQCSNSST SCSGDSTSSS SSNGCLLKKL LPFGRQVVAL  120
QRPRSRSRST HKLGEVEQAA FLLMALSCGS VYA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436136.15e-73PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG105e-34GAT15_ARATH; GATA transcription factor 15
TrEMBLM1C5G52e-56M1C5G5_SOLTU; Uncharacterized protein
STRINGSolyc05g054400.2.12e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-34GATA transcription factor 15