PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01094g03010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 623aa    MW: 71506.6 Da    PI: 6.2152
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01094g03010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.23.8e-2656152195
                    DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 
                               aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f  v+k+FG snv+k +++l++   +++a++s ++e++ +++dPv+G +g ++kl
  Niben101Scf01094g03010.1  56 ACASCKHQRKKCIEGeCVMWRHFPATKMDEFLGVQKVFGISNVTKKIESLDDVAeQDEAIKSFFWEGRLWQEDPVHGPFGEYKKL 140
                               7***********9866**********************************766549***************************** PP

                    DUF260  84 qqqleqlkaela 95 
                               +qql++l +e  
  Niben101Scf01094g03010.1 141 EQQLKELMEEKR 152
                               ******998865 PP

2DUF26083.23.8e-26306402195
                    DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 
                               aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f  v+k+FG snv+k +++l++   +++a++s ++e++ +++dPv+G +g ++kl
  Niben101Scf01094g03010.1 306 ACASCKHQRKKCIEGeCVMWRHFPATKMDEFLGVQKVFGISNVTKKIESLDDVAeQDEAIKSFFWEGRLWQEDPVHGPFGEYKKL 390
                               7***********9866**********************************766549***************************** PP

                    DUF260  84 qqqleqlkaela 95 
                               +qql++l +e  
  Niben101Scf01094g03010.1 391 EQQLKELMEEKR 402
                               ******998865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.31455158IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-2656151IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089117.314305408IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-26306401IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MCFFPDLFYN NLLLRSILCL AGESRMSDNR NNDVEAGTAT ADAVESHEDV GSNRPACASC  60
KHQRKKCIEG ECVMWRHFPA TKMDEFLGVQ KVFGISNVTK KIESLDDVAE QDEAIKSFFW  120
EGRLWQEDPV HGPFGEYKKL EQQLKELMEE KRNKELQIVQ LPDVRYLDEM VARRQISTIS  180
TLSDQEDYLL NSTAPNYSTL LQGYGAFPSQ YNKPVEQRQT GLIPRQLFQE VQFQQYPSRT  240
LQAEGRGISH LANYNDLFYN NLLLRSILCL AGESRMSDNR NNDVEAGTAT ADAVESHEDV  300
GSNRPACASC KHQRKKCIEG ECVMWRHFPA TKMDEFLGVQ KVFGISNVTK KIESLDDVAE  360
QDEAIKSFFW EGRLWQEDPV HGPFGEYKKL EQQLKELMEE KRNKELQIVQ LPDVRYLDEM  420
VARRQISTIS TLSDQEDYLL NSTAPNYSTL LQGYGAFPSQ YNKPVEQRQT GLIPRQLFQE  480
VQFQQYPSRT LQAEGRGISH LANYNGHCQL HQQRCSYINV DLGQGITRGR KRKGHTEHQL  540
VSPSCIGRHV RGREIGRISS FASFSDQWTD NAKTMLRDTT GGRHCEVTIP LPLQYKIFQQ  600
MEVTEELKLF NIISLTITTT IYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-13514007103LOB family transfactor Ramosa2.1
5ly0_B6e-13514007103LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1J6ITB11e-172A0A1J6ITB1_NICAT; Lob domain-containing protein 2
STRINGXP_009619683.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140941012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-18LOB domain-containing protein 2