PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01090g02001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 220aa    MW: 25133 Da    PI: 5.2001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01090g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-1888138255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr ++ +g+++AeIrd + ng   r+++g+f++ae Aa a+++a+ +++g
  Niben101Scf01090g02001.1  88 NYRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFDSAEAAALAYDQAAFAMRG 138
                               59*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-2087147No hitNo description
SuperFamilySSF541717.19E-2288148IPR016177DNA-binding domain
PfamPF008473.3E-1388138IPR001471AP2/ERF domain
PROSITE profilePS5103222.65588146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2988147IPR001471AP2/ERF domain
SMARTSM003806.6E-3688152IPR001471AP2/ERF domain
PRINTSPR003677.3E-1089100IPR001471AP2/ERF domain
PRINTSPR003677.3E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDSSFMHYQN PYDQNYSPHS SSWDEPLFHH NYLPFNVNDT EDMFLFNLVA EGDRTVVKES  60
SAETINTSSS SGTKEEEVTS CEPQKEKNYR GVRKRPWGKF AAEIRDSTRN GVRVWIGTFD  120
SAEAAALAYD QAAFAMRGSL AILNFPVEIV KESLSEMKCR FDEGCSPVIE LKKRHSMRKK  180
TQSRRNIVVR KDESNVVVFE DLGAEHLEEL LSSSECVTNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2987149163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2985149266ATERF1
3gcc_A3e-2985149266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775978.11e-147PREDICTED: ethylene-responsive transcription factor 1B
RefseqXP_016511764.11e-147PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y95e-98ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S4DEV71e-146A0A1S4DEV7_TOBAC; ethylene-responsive transcription factor 1B-like
TrEMBLA0A1U7WBG51e-146A0A1U7WBG5_NICSY; ethylene-responsive transcription factor 1B
STRINGXP_009775978.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-49ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]