PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00991g13022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 224aa    MW: 24547.8 Da    PI: 6.6508
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00991g13022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.22e-312103197
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA  r+ +Pv+Gavg++
  Niben101Scf00991g13022.1   2 SCNGCRVLRKGCSENCILRPCLqwietAESQGHATVFVAKFFGRAGLTSFISAVPENQRPSLFQSLLYEAAGRTVNPVNGAVGLL 86 
                               6*********************9999777889***************************************************** PP

                    DUF260  81 lklqqqleqlkaelall 97 
                               ++++++++q+++e++l+
  Niben101Scf00991g13022.1  87 WTGNWHVCQAAVETVLR 103
                               ***********999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.2511107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETAE SQGHATVFVA KFFGRAGLTS FISAVPENQR  60
PSLFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI PDFLGASLDI  120
DESSECTDIF KLQHPSQNNI QPTMQKRRRF PEEASNVLQL ADLDLSLTPG FQSQKVFNHA  180
LPENRRPATP SMNSEESGTT TCFESGTVIG NHQGNEPKLL SLFN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227577.11e-161PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN111e-83LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A314KRA81e-160A0A314KRA8_NICAT; Lob domain-containing protein 37
STRINGXP_009801229.11e-157(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.15e-86LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]