PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00966g01008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 265aa    MW: 29518.7 Da    PI: 7.9825
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00966g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.59.1e-3547105259
               ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                               ++v+YkeClkNhAas+GghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre++e
  Niben101Scf00966g01008.1  47 AAVTYKECLKNHAASIGGHAVDGCGEFMPSPDSTpSNPTSLKCAACGCHRNFHRREPAE 105
                               6799******************************9********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2049111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.0E-2949103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-3150102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.24351102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.04E-19149220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29152221IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-25159216IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MELTCNSNPT KSTPDSENDT PPLIKPLSFS NGTLKNHHFD HQQPPCAAVT YKECLKNHAA  60
SIGGHAVDGC GEFMPSPDST PSNPTSLKCA ACGCHRNFHR REPAEDNSSP THFPSHFINF  120
HHHILPPIRR FSLSPSSSPP PPLQPQPITP KAEYNPSGRK RFRTKFTQEQ KEKMHYFSEK  180
LGWKLQKCDE AKVEEFCNEI GVGKGVLRVW MHNNKNTFAK KDDHNNTNGF NINGSSSNED  240
HNNNNDSNNC GLHLHISTNG SSSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-221602171875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229999.11e-162PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9SEZ19e-59ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A314KKG81e-161A0A314KKG8_NICAT; Zinc-finger homeodomain protein 9
STRINGXP_009788342.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-50homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]