PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00799g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 296aa    MW: 33776.6 Da    PI: 8.11
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00799g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-5281321128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeelv++yL++k++++++ +  +i+e+d+yk++PwdLp  +  ++kewyfFs+rd+ky++g+r+nra+ +gyWka
  Niben101Scf00799g00011.1   8 LPPGFRFHPTDEELVMHYLCRKCASQPIAV-PIIAEIDLYKYDPWDLPGLALYGKKEWYFFSPRDRKYPNGSRPNRAAGNGYWKA 91 
                               79**************************99.88***************65556789***************************** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg dk++ +   + vg+kk Lvfy g+apkgekt+W+mheyrl
  Niben101Scf00799g00011.1  92 TGADKPIGH--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 132
                               *******99..789***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-633159IPR003441NAC domain
PROSITE profilePS5100560.2518159IPR003441NAC domain
PfamPF023651.0E-279132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAAVELQLPP GFRFHPTDEE LVMHYLCRKC ASQPIAVPII AEIDLYKYDP WDLPGLALYG  60
KKEWYFFSPR DRKYPNGSRP NRAAGNGYWK ATGADKPIGH PKPVGIKKAL VFYAGKAPKG  120
EKTNWIMHEY RLARVDRSAR NKNNSLRLDD WVLCRIYNKK GTMEKNQLNS RKMDVGMSTP  180
ASEMDVKPEI LPLPNSTRPS QVYSDFMHFD SSDSLPKLHT NSSCSEHVLS PEFTCEREVQ  240
SEPKLSDWEK TALDLQFNYM DAIPDVGDNS LLGSQLQGCY GMSPLQDIFM YLQKPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-8221659174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016505492.10.0PREDICTED: NAC domain-containing protein 2-like isoform X1
SwissprotQ390131e-138NAC2_ARATH; NAC domain-containing protein 2
TrEMBLA0A386AWC40.0A0A386AWC4_NICBE; SYNV P interacting NAC transcription factor
STRINGXP_009795736.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12392481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-140NAC family protein
Publications ? help Back to Top
  1. Florentin A,Damri M,Grafi G
    Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization.
    Dev. Dyn., 2013. 242(10): p. 1121-33
    [PMID:23798027]
  2. Jensen MK, et al.
    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.
    FEBS Open Bio, 2013. 3: p. 321-7
    [PMID:23951554]
  3. Wang YX
    Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
    Mol. Biol. Rep., 2013. 40(11): p. 6451-8
    [PMID:24057250]
  4. Yang X, et al.
    Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis.
    Plant Cell Rep., 2015. 34(6): p. 943-58
    [PMID:25666276]
  5. Du Q,Wang H
    The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
    Plant Signal Behav, 2015. 10(10): p. e1078955
    [PMID:26340415]
  6. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  7. Liu Y,Sun J,Wu Y
    Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice.
    J. Plant Res., 2016. 129(5): p. 955-962
    [PMID:27216423]
  8. Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR
    Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining.
    PLoS ONE, 2016. 11(9): p. e0162327
    [PMID:27618630]
  9. Zhao J,Missihoun TD,Bartels D
    The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana.
    Planta, 2018. 248(4): p. 1017-1027
    [PMID:30027414]