PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00725g01012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 235aa    MW: 25606.2 Da    PI: 7.8877
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00725g01012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.46.3e-304106198
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g++
  Niben101Scf00725g01012.1   4 SCNGCRVLRKGCNEQCSIKPCLqwiksPESQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLL 88 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaelallk 98 
                               +++++ql+q+++e++l +
  Niben101Scf00725g01012.1  89 TSGNWQLCQAAVEAVLSG 106
                               ************998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.533109IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNEQCS IKPCLQWIKS PESQSNATLF LAKFYGRAGL LNLINSGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGASME KLSPDSAVNS  120
VCPSLKACDI RHVSKENDLT PDLHKVKMRT KFKRVSAKMQ QRNQSPEVDD AARVMWSWSH  180
KEEAMGSPSR DSGLSQQLEG ESGDVGSSSV ETVEASLAKL DESDIGLELT LGCSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792341.11e-160PREDICTED: LOB domain-containing protein 41-like
RefseqXP_016491547.11e-160PREDICTED: LOB domain-containing protein 41-like
RefseqXP_019244132.11e-160PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8863e-75LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1J6IKE11e-159A0A1J6IKE1_NICAT; Lob domain-containing protein 41
TrEMBLA0A1S4BRN61e-159A0A1S4BRN6_TOBAC; LOB domain-containing protein 41-like
TrEMBLA0A1U7XRS61e-159A0A1U7XRS6_NICSY; LOB domain-containing protein 41-like
STRINGXP_009792341.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-76LOB domain-containing protein 41