PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00687g08017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 692aa    MW: 78284.9 Da    PI: 5.2018
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00687g08017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.75e-18591686280374
                      GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                               ++++  E + +g+ i+n+va+egaer+ r+ +l  Wr+ + ++G+ +++lse+   qa+l+l++++ +   +v+++ ++l+  Wk
  Niben101Scf00687g08017.1 591 NTMRRTEVFHIGEGIRNMVAAEGAERFTRNMKLDVWRAYFARFGMVEMELSESSWYQANLILKQFSqGSSCNVQNDGKALLVVWK 675
                               5677889999********************************************************88889************** PP

                      GRAS 364 drpLvsvSaWr 374
                               + p+ s+S W+
  Niben101Scf00687g08017.1 676 GTPIESISIWK 686
                               **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.7E-15591686IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MGSSSQICHQ EEKKTVSFFD YVANMLKESF QCLTIILLSL LLPLSFIVLA RLSVARYLIT  60
TSAEYYTLPD SLLVKIFLYA NPNILHVLVP LVAVSALIYG LTGRTILFIK QSADHMTYSK  120
PCLYTAWFFL FMLQLCVCIG VEGSIAIGIG GSSSFSHHER LCLLSRVIFF FGLHETTSFW  180
SKKGVKPVAN DTIFGVETAD DRVVEKVAMA MNFGVLWWWK LRDEVESLVV VAEVKRELIG  240
SVDLVDFVGW WLYYMTVAIG MVKIVKGLIW VCFVLFCGNV VELENAVYST RNDDKAGHNH  300
LQECGRNELV NRVIDPLFEL DSEDIDSLYS VLDLKYQENT SDEHVQLSED QQQNISDYCT  360
QSDDSSSNMD FPLQPVQIQS TFEASNRIQP QVPRLGNFHG KKTNPISSAS LELLNNCGRF  420
FKKSNEENLS NVHINEAHIQ YSTQMVDGLS MFIHPYASAL SGLSMEQTRD MELVHLLLAA  480
AEEVDQQQFH LASQSVARTT PEALTCHTEI PFSQVMQFAG VQAIIENVKG ATKIHLNWNS  540
VYMQALAEQL FMSDMKDLRV ESVNVKADGT VAVYCNVVLR TMISRPEYMD NTMRRTEVFH  600
IGEGIRNMVA AEGAERFTRN MKLDVWRAYF ARFGMVEMEL SESSWYQANL ILKQFSQGSS  660
CNVQNDGKAL LVVWKGTPIE SISIWKFFSG EY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477658.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLK4C3Z10.0K4C3Z1_SOLLC; Uncharacterized protein
STRINGSolyc06g009610.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46941842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.19e-11GRAS family protein