PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00646g07008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 714aa    MW: 80489.2 Da    PI: 5.9084
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00646g07008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.18.3e-22504592186
                  trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 
                               +Wt+++v++Li+++++++ ++ ++    kk++W+++s +m+erg ++sp+qC++k+++lnk++k++++  +++t + ++++ +++
  Niben101Scf00646g07008.1 504 KWTDEMVKLLITGVSYIGGDVLSNGlfIKKGKWRAISCVMAERGHHVSPQQCEDKFNDLNKKFKRLNDVLGRGTaCHVVENPALL 588
                               7*******************998764579********************************************548888888888 PP

                  trihelix  83 dqle 86 
                               + ++
  Niben101Scf00646g07008.1 589 EMMD 592
                               8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000226.5E-1425371IPR004000Actin family
Gene3DG3DSA:3.30.420.402.9E-765188No hitNo description
SuperFamilySSF530672.54E-656155No hitNo description
SMARTSM002681.8E-2257377IPR004000Actin family
CDDcd000121.40E-1910183No hitNo description
PRINTSPR001903.1E-552837IPR004000Actin family
PRINTSPR001903.1E-555162IPR004000Actin family
PROSITE patternPS0040605565IPR004001Actin, conserved site
PRINTSPR001903.1E-556385IPR004000Actin family
PROSITE patternPS011320106118IPR020902Actin/actin-like conserved site
PRINTSPR001903.1E-55117130IPR004000Actin family
PRINTSPR001903.1E-55142161IPR004000Actin family
SuperFamilySSF530673.46E-92149367No hitNo description
Gene3DG3DSA:3.90.640.103.0E-40189258No hitNo description
PRINTSPR001903.1E-55238254IPR004000Actin family
Gene3DG3DSA:3.30.420.402.8E-36259367No hitNo description
PROSITE patternPS004320358366IPR004001Actin, conserved site
PROSITE profilePS500906.133497563IPR017877Myb-like domain
PfamPF138377.0E-18502616No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MADSEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA  60
QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP DEHPVLLTEA PLNPKANREK  120
MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL  180
DLAGRDLTDC LMKILTERGY SFTTSAEREI VRDVKEKLAY VALDYEQELE TAKSSSSVEK  240
SYELPDGQVI TIGSERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV  300
LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIT  360
KGEYDESESI VILRVLLPLC GMGRTARHGS RYDGREDGET SKVSVARTSN PHDLETWWAG  420
MSMQVNRQLT DHPNQGPVVL GQHAPEVMSF GVNNMEDIDQ EMQLLDSIKF NSVEMPEVYH  480
KGMNDVTEVC GHAEEKRPVY HRMKWTDEMV KLLITGVSYI GGDVLSNGLF IKKGKWRAIS  540
CVMAERGHHV SPQQCEDKFN DLNKKFKRLN DVLGRGTACH VVENPALLEM MDLSDDLKEE  600
IKKLLGSKQL FYQELCSYNN QNRLFLPHDQ DVQKSVLLAV KDEHAPPRLL QLEEQKLQIQ  660
AQILELEKKR FKHMRFCSKE DKELQKIMLD NEVIKLENQR LVLELKRSGM RPFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1nlv_A0.033741372Actin
1nm1_A0.033741372Actin
1nmd_A0.033741372Actin
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759480.10.0PREDICTED: actin-101
RefseqXP_016479231.10.0PREDICTED: actin-101-like
RefseqXP_019267646.10.0PREDICTED: actin-101
RefseqXP_019267647.10.0PREDICTED: actin-101
SwissprotP301730.0ACT13_SOLTU; Actin-101
TrEMBLA0A1S4ARM10.0A0A1S4ARM1_TOBAC; actin-101-like
TrEMBLA0A1U7VCD40.0A0A1U7VCD4_NICSY; actin-101
TrEMBLA0A314KXV40.0A0A314KXV4_NICAT; Actin-101
STRINGXP_009759480.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125851620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.14e-55
Publications ? help Back to Top
  1. Drouin G,Dover GA
    Independent gene evolution in the potato actin gene family demonstrated by phylogenetic procedures for resolving gene conversions and the phylogeny of angiosperm actin genes.
    J. Mol. Evol., 1990. 31(2): p. 132-50
    [PMID:2120451]