PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00339g04009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 229aa    MW: 26207.5 Da    PI: 5.3057
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00339g04009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.31.2e-38101101100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklq 84 
                               aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+l++l ++e++ dam+s+++e++++ r PvyG+v+ i +l+
  Niben101Scf00339g04009.1  10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILRQLdDDEQKADAMKSIIFESDMWERFPVYGCVEYICHLR 94 
                               7************************************************555669****************************** PP

                    DUF260  85 qqleqlkaelallkee 100
                               qql+ + +el+++ ++
  Niben101Scf00339g04009.1  95 QQLQLALEELHYVYAQ 110
                               *********9998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2259111IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3710106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILRQLDD  60
DEQKADAMKS IIFESDMWER FPVYGCVEYI CHLRQQLQLA LEELHYVYAQ LAFYRQQQQQ  120
QQQLALQHGV TSEIPFVNGI SMGPFFTSEG ECSEGGQKPN LLGSDSIFDH NNSRAFPASD  180
HAIFGFGIRD DQRDISHEYE CLINPFNNIM ADDRQSYVET KEACDSRYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2421144114LOB family transfactor Ramosa2.1
5ly0_B4e-2421144114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254019.11e-154PREDICTED: LOB domain-containing protein 11-like
SwissprotQ9STS68e-40LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A1J6I1I51e-152A0A1J6I1I5_NICAT; Lob domain-containing protein 27
STRINGXP_009768780.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.15e-37LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]