PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00337g06003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 390aa    MW: 42789.6 Da    PI: 6.9796
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00337g06003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP38.72.6e-12751015278
                               TTT--SS--S-STTTT-------S--- CS
                       SBP  52 lsefDeekrsCrrrLakhnerrrkkqa 78 
                                 efD++krsCr+rLa+hnerrrk+q+
  Niben101Scf00337g06003.1  75 TAEFDDGKRSCRKRLAGHNERRRKPQT 101
                               579*********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511419.6222299IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.08E-975102IPR004333Transcription factor, SBP-box
PfamPF031101.6E-57698IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MMENAAAANV LLVITSGGGS LKQVCILAEQ EDSFNHMLVL QVQGFKELLL QHHISSAKIY  60
SAVAFFINQN TICTTAEFDD GKRSCRKRLA GHNERRRKPQ TGSAGTRFQG TPFATSSFIC  120
EDIPGTRFQG TPFATSSFIC EDILGSGLLH QPKHNMHDWY KNVKVEHSAD YSPQLTMPFT  180
NGHSQPRSLF STSYHTDKHP PALHDEGITA ITRSKNNESS NSYLNDIEGS DFVSRSLFHN  240
TSIGSEVLNV MDSASNFQGI SNSGCALSLL SSQSQDSSNY SSLVPNAHHL ITLSSNTHYN  300
VTQTSVKFPG VNLKDSTSNA SSIFNLSGSV SAEDRMEQIL RNNCGINVSI HGSDHVNTKN  360
LLSCEDGPTI DLLQLSSQLH RVEHQRHSMK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786196.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A1U7X9610.0A0A1U7X961_NICSY; squamosa promoter-binding-like protein 6
STRINGXP_009786196.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51871639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-09SBP family protein