PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00128g05008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 198aa    MW: 22593.4 Da    PI: 6.8986
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00128g05008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.61.8e-3710109199
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklq 84 
                               aCaaCk++rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++k+l++l  ++++ dam+s+++e+++r + PvyG+v+ il l+
  Niben101Scf00128g05008.1  10 ACAACKYQRRKCSQQCVLASYFPADQPKKFQNAHRLFGVRNIVKTLEQLdGDDQKADAMKSIIFESDMREKFPVYGCVECILYLR 94 
                               7************************************************445569****************************** PP

                    DUF260  85 qqleqlkaelallke 99 
                               qql+ + +e +++ +
  Niben101Scf00128g05008.1  95 QQLQLALQEREYVYT 109
                               ****99999888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1019111IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3510105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTKGETSRPA CAACKYQRRK CSQQCVLASY FPADQPKKFQ NAHRLFGVRN IVKTLEQLDG  60
DDQKADAMKS IIFESDMREK FPVYGCVECI LYLRQQLQLA LQEREYVYTQ LAIYRQQHLG  120
LSSSENNSVG NKGIMTAPFF SSDSESSQGI IYPDFDKHNS LAYPTSSHVF RLGSQEQQEV  180
SRDFESLTLF NSTLVDDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-261112012120LOB family transfactor Ramosa2.1
5ly0_B2e-261112012120LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795991.11e-130PREDICTED: LOB domain-containing protein 27-like
SwissprotQ9STS64e-35LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A1U7Y2161e-128A0A1U7Y216_NICSY; LOB domain-containing protein 27-like
STRINGXP_009795991.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.16e-35LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]