PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00088g01008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 213aa    MW: 23492.3 Da    PI: 8.8248
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00088g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.59.2e-33119175158
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               dep++VNaKQy++Il+RRq+Rak+e+ekkl  k+rkpylheSRh hAl+R+Rg+gGrF
  Niben101Scf00088g01008.1 119 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKARKPYLHESRHLHALKRARGCGGRF 175
                               79****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-35117178IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.593118178IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.4E-27120175IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-23121143IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860123143IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-23152175IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSTVLVVYGI TYARADGNEN ELPEKQSEAH SESSSPATGM SVPGTVTPNM HYVMPAQHGN  60
ENAMAQTAYP YPDPYYRSIF APYDIQPYPT QPYPAQPMVH VQLMGIQQAG VPLPSDAIDE  120
PVFVNAKQYH GILRRRQSRA KAESEKKLLK ARKPYLHESR HLHALKRARG CGGRFTAKKT  180
DNQPKQDESG GNSQVNINLE SGKNEVASAE NAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-21118190173NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227567.11e-140PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2
SwissprotQ84JP12e-59NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A1S4BG111e-137A0A1S4BG11_TOBAC; nuclear transcription factor Y subunit A-7-like isoform X4
TrEMBLA0A1U7UUH31e-137A0A1U7UUH3_NICSY; nuclear transcription factor Y subunit A-7-like isoform X4
STRINGXP_009759697.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66502333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-50nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]