PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00022g01003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 545aa    MW: 62467.8 Da    PI: 5.7546
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00022g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.59.6e-20423496171
                  trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk..rykkikegekkr 71 
                               rW++ ev aLi++r+++e+++++ +  k+ lWee+s+ m++ gfe+s+ +Ckekwen++k    kk+ke+ +++
  Niben101Scf00022g01003.1 423 RWPQAEVEALIQIRNNLESKFQEaAGPKGVLWEEISNSMASMGFEKSARRCKEKWENMHKcsTVKKTKEITREQ 496
                               8*********************9356999*****************************9944467777776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.853416481IPR017877Myb-like domain
PfamPF138375.2E-14422483No hitNo description
CDDcd122032.88E-20422482No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQSDYEMAGI HHQRNRNQQP QVEQQQQQQQ HRFIMENAST SSPFFPINYN HHYPPQQPNP  60
LLQPFTQQFF QYQHLHYRSI LEQQQHQDIR LELNAEGENH QVQGVSVPFF PLSFKGDSSG  120
KGERGEDDLI RGSEGYCNEA RQTSLAVSHC WQNQEDSAIK QPFWKPLCAE FSNRNNNNSN  180
ESEKNKQEED QEMYPDEIHQ QQIIKSLEEN KCRVVFGELE AIYATNADNT NTTNIHRIAS  240
ESVLTAEDLP INNNNNVSFP VATFNDSNQT SGPTAIATTT PAAIDIGSES TSVGEATRED  300
EVHNKSKRRR KAKEGTSITM ARFFESLIKK LVKHQEALQM RFMETIERLD QERKEREETW  360
REQELAKLQK EAAVRAQERT LSSNREAALV SYLEKLTGQK INFQKESEPD KSCNSLVKLN  420
NKRWPQAEVE ALIQIRNNLE SKFQEAAGPK GVLWEEISNS MASMGFEKSA RRCKEKWENM  480
HKCSTVKKTK EITREQLNDG NNSIDFVIQG NDTVEDHLGT VNLTEGNNGN SEKDKHGNGE  540
NKNGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782860.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A1U7X8T00.0A0A1U7X8T0_NICSY; trihelix transcription factor GT-2-like
STRINGXP_009782860.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11622911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-33Trihelix family protein