PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg14882g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 273aa    MW: 29214.8 Da    PI: 5.7494
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg14882g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.5e-3789184398
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesss 79 
                               + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++              
  Niben101Ctg14882g00002.1  89 PPKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngtlkiP----- 168
                               6799***********************************************************77777444211111110..... PP

                       TCP  80 ssasnsssgkaaksaaksk 98 
                                 + ++  + ++ ++a+++
  Niben101Ctg14882g00002.1 169 --TTSPATN-SEGENATKR 184
                               ..1111111.111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-3093174IPR005333Transcription factor, TCP
PROSITE profilePS5136927.34294148IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MENKQNIEPE NDEVNDSKIL SADPLLGDSE EYTIKAVGQH VTDAEGVGPS SPSTDIVPLL  60
KEEPAENDLR GGTISVGLNM QLQKVENPPP KRSSKDRHTK VEGRGRRIRM PAACAARIFQ  120
LTRELGHKSD GETIRWLLER AEPAIIEATG TGTVPAIAVS VNGTLKIPTT SPATNSEGEN  180
ATKRRKRAAN SEFYDVHEPS NFAPVAPIAP QSLLPVWAVA SGNGLVPTTG GTTFFMVQPP  240
PTSTTTIATA GPSYPPQLWA TPLYNIPGRP ISN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231219.10.0PREDICTED: transcription factor TCP19-like
SwissprotO646474e-60TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A314KIA90.0A0A314KIA9_NICAT; Transcription factor tcp19
STRINGXP_009780060.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-61TCP family protein