PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg14421g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 245aa    MW: 26709.4 Da    PI: 7.589
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg14421g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.22.9e-294107199
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+l+++ p++  +++++sl+yeA+ r+ +P+yG++g++
  Niben101Ctg14421g00002.1   4 SCNGCRVLRKGCNEQCSIRPCLqwiksPEAQSNATLFLAKFYGRAGLLNLINSGPDHLCPAIFRSLLYEACGRIVNPIYGSTGLL 88 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaelallke 99 
                               +++++ql+q+++e++l ++
  Niben101Ctg14421g00002.1  89 TSGNWQLCQAAVEAVLSGA 107
                               ************9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7463109IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNEQCS IRPCLQWIKS PEAQSNATLF LAKFYGRAGL LNLINSGPDH  60
LCPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGASIE KLSPDSAANT  120
VCPSLNACDI RHVSKENDLT PDLHKVKMRT KFKRVSAKPQ QRNQSPEVDD AARVMWSWSH  180
KEEPIGSPSR ESGLSQQREG ESGDADSGSV ETVEDSLAKL ENDIGLELTL GLQPLIKLPQ  240
CGTTR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244132.11e-166PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8869e-77LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1J6IKE11e-164A0A1J6IKE1_NICAT; Lob domain-containing protein 41
STRINGXP_009630484.11e-165(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-79LOB domain-containing protein 41