PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg13932g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 193aa    MW: 21578.4 Da    PI: 5.8351
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg13932g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.84.2e-2144192161324
                      GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                 ++L  fA+++++++++n +    l++l+ + ++ +++E l+++ +l+lh+l ++s + +           sl+Pk vv++e++
  Niben101Ctg13932g00004.1  44 FSSQLLAFAKAININLQINRMENYPLQNLDSQVINSSSDEILVICAQLRLHNLKHNSPDERT----------SLEPKGVVLSENN 118
                               56899***************8777*****************************966666665..........9************ PP

                      GRAS 246 adh..ns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                               +d+  ns ++F+++f++ +ey ++++ds+++ +    + r   Er++++ e+ +++++ g++    +e++ekW er++++GF
  Niben101Ctg13932g00004.1 119 MDCscNScGDFATGFARQVEYLWKFLDSISVAY----KGREGAERRMMEGEAAKALTNMGEM----NERKEKWCERMQTVGF 192
                               8875444259*******************9995....89999999999*************9....88888**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.9941193IPR005202Transcription factor GRAS
PfamPF035141.5E-1844192IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MANVARGVDP SIRRAATIGS SNSYIENDQL RNSPFVIGPA GYNFSSQLLA FAKAININLQ  60
INRMENYPLQ NLDSQVINSS SDEILVICAQ LRLHNLKHNS PDERTSLEPK GVVLSENNMD  120
CSCNSCGDFA TGFARQVEYL WKFLDSISVA YKGREGAERR MMEGEAAKAL TNMGEMNERK  180
EKWCERMQTV GFV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594760.11e-108PREDICTED: nodulation-signaling pathway 1 protein-like
RefseqXP_016457577.11e-108PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC83e-79NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A1S3Z0D81e-106A0A1S3Z0D8_TOBAC; nodulation-signaling pathway 1 protein-like
STRINGXP_009594760.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.14e-45GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]