PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg04506g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 121aa    MW: 13839.1 Da    PI: 10.5638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg04506g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.4e-16246956
                       AP2  9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              ++ +g+++AeIrd + ng   r++lg+f+t eeAa a+++a+ +++g+
  Niben101Ctg04506g00002.1  2 RP-WGKYAAEIRDSTRNG--IRVWLGTFDTVEEAALAYDQAAFSMRGP 46
                              56.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.48E-24153No hitNo description
PROSITE profilePS5103219.085153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-25154IPR001471AP2/ERF domain
SMARTSM003806.8E-27159IPR001471AP2/ERF domain
PfamPF008472.0E-10245IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-19255IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
KRPWGKYAAE IRDSTRNGIR VWLGTFDTVE EAALAYDQAA FSMRGPLAFL NFPMEKVKES  60
LQNINMNSIQ LLDGLSPAAA LKETHKMRMK NVKRRRNRKK KKAVLVFEDL GADLLEELLM  120
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-261552074Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799481.19e-83PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_016515494.14e-81PREDICTED: uncharacterized protein LOC107832195
SwissprotA0A3Q7I5Y98e-47ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S4DQT78e-80A0A1S4DQT7_TOBAC; uncharacterized protein LOC107832195
TrEMBLA0A1U7YC102e-81A0A1U7YC10_NICSY; ethylene-responsive transcription factor 1B-like
STRINGXP_009799481.14e-82(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-37ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]