PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg01201g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 134aa    MW: 14750.1 Da    PI: 9.0241
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg01201g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.19.8e-27198698
                    DUF260  6 kvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87
                              +vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p+  r+++++sl+yeA+ r+ +P+yG+vg+++++++ql
  Niben101Ctg01201g00001.1  1 RVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPDPLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQL 87
                              689************************************************************************************ PP

                    DUF260 88 eqlkaelallk 98
                              +q ++e +l +
  Niben101Ctg01201g00001.1 88 CQNAVEDVLKG 98
                              **999877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.1E-20193IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089114.2161101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
RVLRKGCSES CSIRPCLQWI KTPESQSNAT VFLAKFYGRA GLMNLINAGP DPLRPAIFRS  60
LLYEACGRIV NPIYGSVGLL WSGNWQLCQN AVEDVLKGAP ITPITSEVAV NNNGPPLKLP  120
YDIRHINKDD NAIK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801662.14e-93PREDICTED: LOB domain-containing protein 41-like
RefseqXP_016495337.14e-93PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8862e-75LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S4C2G19e-92A0A1S4C2G1_TOBAC; LOB domain-containing protein 41-like
TrEMBLA0A1U7YC069e-92A0A1U7YC06_NICSY; LOB domain-containing protein 41-like
STRINGXP_009801662.11e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-78LOB domain-containing protein 41