PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g093790.1
Common NameMTR_8g093790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 186aa    MW: 21408.8 Da    PI: 4.2589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g093790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.81.9e-27101191128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGf F+Ptdeelv ++L  k++   ++   +i+e+++ +++Pw++  k+ ++e+e yfF++         ++nr+t++gyWk+ g +k++ +
  Medtr8g093790.1  10 LPPGFYFSPTDEELVLHFLYSKASLPYHPN--IIPELHLSHHDPWEIYGKALSSENEHYFFTEV--------KENRSTENGYWKEIGVTKPINK 93 
                      79********************99888666..8**************9777788999****986........45899***************88 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            g+kk Lvf      +g +t+Wvm+ey++
  Medtr8g093790.1  94 -----LGMKKYLVFNL---GEGIETSWVMEEYHI 119
                      .....9********95...56777********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-366138IPR003441NAC domain
PROSITE profilePS5100533.5510138IPR003441NAC domain
PfamPF023651.1E-2011119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MMGSESSVKL PPGFYFSPTD EELVLHFLYS KASLPYHPNI IPELHLSHHD PWEIYGKALS  60
SENEHYFFTE VKENRSTENG YWKEIGVTKP INKLGMKKYL VFNLGEGIET SWVMEEYHIS  120
SSPDENWSKW VLCKVYEKEK KMSQEGASCC YSDEDIDDNG TDVSWLDEVF MSLDDDDLDQ  180
TSLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-2741399169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g093790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221641e-110AC122164.6 Medicago truncatula clone mth2-24h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630281.11e-135NAC domain-containing protein 104
SwissprotQ8GWK63e-47NC104_ARATH; NAC domain-containing protein 104
TrEMBLG7LE351e-133G7LE35_MEDTR; NAC transcription factor-like protein
STRINGAET047571e-134(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-45xylem NAC domain 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]